| Missy Elliott ft. Pharrell Williams | WTF (Where They From) | — | 120 | Top 40 | Atlantic | 2015 |
| Missy Elliott ft. Pharrell Williams | WTF (Where They From) | No Slow Down Intro Edit | 120 | Hip-Hop | Atlantic | 2015 |
| Missy Elliott ft. Pharrell Williams | WTF (Where They From) | Original Quick Edit* | 120 | Top 40 | Atlantic | 2015 |
| Missy Elliott ft. Sum1 | DripDemeanor | Instrumental | 60 | Hip-Hop | Instrumental | 2019 |
| Missy Elliott ft. Sum1 | DripDemeanor | Dj Slique Quick Edit | 60 | Hip-Hop | Dj Slique Quick Edit | 2019 |
| Missy Elliott ft. Sum1 | DripDemeanor | Explicit | 60 | Hip-Hop | Explicit | 2019 |
| Missy Elliott ft. Sum1 | DripDemeanor | PO Clean Edit | 60 | Hip-Hop | PO Clean Edit | 2020 |
| Missy Elliott ft. Sum1 | DripDemeanor | Dj Slique Intro Edit | 60 | Hip-Hop | Dj Slique Intro Edit | 2019 |
| Missy Elliott ft. Timbaland | 9th Inning | — | 62 | Urban | Atlantic | 2012 |
| Missy Elliott ft. Timbaland | 9th Inning | Clean Edit | 62 | Urban | Atlantic | 2012 |
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| Missy Elliott ft. Timbaland | Triple Threat | Quick Edit | 66 | — | Atlantic | 2012 |
| Missy Elliott ft. Timbaland | Triple Threat | — | 66 | — | Atlantic | 2012 |
| Missy Elliott ft. Tweet | (Four) 4 My People | Basement Jaxx Vocal Edit | 131 | — | The GoldMind Elektra Entertainment | 2004 |
| Monica Feat. Busta Rhymes & Missy Elliott | So Gone | Remix | 81 | — | J Records | 2003 |
| Nicole Feat. Missy Elliott & Mocha | Make It Hot | — | 84 | Hip-Hop | Elektra Entertainment Group | 1998 |
| SWV ft. Missy Elliott | Can We | — | 85 | Pop | Jive | 2017 |
| TC Feat. Missy Elliott | Take That | Amended Version | 93 | Hip-Hop | Elektra Entertainment | 2000 |
| The Pussycat Dolls ft. Missy Elliott | Whatcha Think About That | — | 120 | — | Interscope | 2008 |
| Timbaland & Magoo Feat. Missy Elliott | Cop That Sh#! | — | 101 | — | Blackground/universal Records | 2003 |
| Timbaland & Magoo ft. Missy Elliot | Up Jumps Da' Boogie | — | 150 | — | Blackground/Atlantic | 2007 |
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| Timbaland Feat. Dr. Dre, Justin Timberlake, And Missy Elliot | Bounce | — | 66 | Hip-Hop | — | 2007 |
| Timbaland Feat. Missy Elliott & Magoo | Here We Come | Radio Edit | 93 | Hip-Hop | Atlantic Records | 1998 |
| Timbaland Feat. Missy Elliott & Magoo | Here We Come | — | 94 | Hip-Hop | Atlantic Records | 1998 |
| Timbaland Feat. Missy Elliott & Magoo | Here We Come | Album Version | 94 | Hip-Hop | Black Ground Entertainment | 1998 |
| Timbaland ft. Missy Elliott & Magoo | Here We Come | — | 94 | Rock | Atlantic | 2012 |