| Missy Elliott | Slide | — | 99 | Dance | — | — |
| Missy Elliott | Sock It 2 Me | — | 82 | Rock | EastWest | 2014 |
| Missy Elliott | Suck My Dick | — | 167 | — | — | — |
| Missy Elliott | Take Away | — | 63 | Hip-Hop | Elektra Entertainment | 2001 |
| Missy Elliott | Teary Eyed | Maurice Joshua Club Mix | 128 | — | The Gold Mind Atlantic | 2006 |
| Missy Elliott | Teary Eyed | Tiefschwarz Club Mix | 128 | Top 40 | The Gold | 2006 |
| Missy Elliott | Teary Eyed | Sugardip Club Mix | 126 | — | The Gold Mind/Atlantic | 2006 |
| Missy Elliott | Teary Eyed | — | 90 | — | The Gold Mind/Atlantic Recordings | 2005 |
| Missy Elliott | Teary Eyed | Sugar Dip Morning After Mix | 118 | — | The Gold Mind Atlantic | 2006 |
| Missy Elliott | The Rain (Supa Dupa Fly) | — | 81 | Urban | EastWest EEG | 2004 |
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| Missy Elliott | The Rain (supa Dupa Fly) | — | 80 | Hip-Hop | Elektra Entertainment Group | 1997 |
| Missy Elliott | Throw It Back | PO Quick Edit | 79 | Hip-Hop | PO Quick Edit | 2019 |
| Missy Elliott | Throw It Back | PO Clean Edit | 79 | Hip-Hop | PO Clean Edit | 2019 |
| Missy Elliott | Throw It Back | PO Intro Edit | 79 | — | PO Intro Edit | 2019 |
| Missy Elliott | We Run This | — | 110 | — | Atlantic | 2006 |
| Missy Elliott | We Run This | PO Clean Edit | 110 | — | Atlantic | 2006 |
| Missy Elliott | Work It | Squeeky Clean | 102 | Hip-Hop | Elektra Entertainment | 2002 |
| Missy Elliott | Work It | — | 102 | — | Elektra | 2007 |
| Missy Elliott Feat. 50 Cent | Work It | Amended Remix | 102 | Hip-Hop | The Goldmind/elektra Entertainment | 2002 |
| Missy Elliott Feat. 50 Cents | Work It | Remix | 102 | Hip-Hop | The Gold Mind/elektra Entertainment | 2003 |
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| Missy Elliott Feat. Big Boi & Nicole | All N My Grill | — | 85 | Hip-Hop | Elektra Entertainment | 1999 |
| Missy Elliott Feat. Eve | 4 My People | — | 121 | Hip-Hop | Goldmind/elektra Entertainment | 2001 |
| Missy Elliott Feat. Ginuwine | Take Away | — | 63 | Hip-Hop | The Gold Mind/elektra Entertainment | 2001 |
| Missy Elliott Feat. Lil' Kim | Hit 'em Wit Da Hee | — | 85 | Hip-Hop | Elektra Entertainment Group | 1998 |
| Missy Elliott Feat. Lil' Kim & Mocha | Hit 'em Wit Da Hee | — | 85 | Hip-Hop | Elektra Entertainment Group | 1998 |